D.1 Basics

First a short explanation of the directory structure:

user=$LOGNAME

/home/<user>/adaten is the directory for the atomic data checked by ATOMS2.
/home/<user>/bimod is the directory for the executable binaries of LTE2 and PRO2.
/home/<user>/fgrids is the directory for the frequency grids that were produced with SETF2.
/home/<user>/jobs is the directory for all the .job files (ATOMS2, SETF2, LTE2, and PRO2).
/home/<user>/models is the directory where the calculated models from LTE2 and PRO2 are.

For our script, we use the following definitions / shell variables:

setenv AA /home/<user>/adaten

setenv BI /home/<user>/bimod

setenv FF /home/<user>/fgrids

setenv JO /home/<user>/jobs

setenv MO /home/<user>/models